SNP Profiles of IMC 47 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	CC	TT	CC	GG	GT	AT	CC	CC	GG	GG	AG	TT	AC
1._IMC_47	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
2._RUQ_849	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
3._RUQ_849	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
4._IMC_47	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
5._IMC_47	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
6._IMC_47	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
7._IMC_47	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
8._IMC_47	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
9._IMC_47	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
10._IMC_47	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
11._IMC_47	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
12._IMC_47	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
13._IMC_47	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
14._IMC_47	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
15._MITC-000413	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
16._GC-08-103-3-02	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
17._GC-08-103-3-02	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
18._GC-08-103-3-02	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
19._GC-08-103-3-02	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
20._GC-08-103-3-02	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
21._GC-08-103-3-02	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
22._GC-08-103-3-02	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
23._GC-08-103-3-02	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
24._GC-08-103-3-02	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
25._GC-08-103-3-2	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CC	CC	AA	CC	AC	AA	GG	AA	AC	CC	TT	AG	CC
1._IMC_47	_	_	_	_	_	AC	_	GG	_	AC	_	_	_	_
2._RUQ_849	GG	_	_	_	_	AC	_	CG	_	AC	CC	_	_	_
3._RUQ_849	_	_	_	_	_	AC	_	GG	_	AC	_	_	_	_
4._IMC_47	_	_	_	_	_	CC	_	GG	_	AA	_	_	_	_
5._IMC_47	_	_	_	_	_	AC	_	CC	_	AC	_	_	_	_
6._IMC_47	_	_	_	_	_	AC	_	CG	_	AC	_	_	_	_
7._IMC_47	_	_	_	_	_	AC	_	CG	_	AC	_	_	_	_
8._IMC_47	_	_	_	_	_	AC	_	CG	_	AC	_	_	_	_
9._IMC_47	_	_	_	_	_	AC	_	CG	_	AC	_	_	_	_
10._IMC_47	_	_	_	_	_	AC	_	CG	_	AC	_	_	_	_
11._IMC_47	_	_	_	_	_	AC	_	CG	_	AC	_	_	_	_
12._IMC_47	_	_	_	_	_	AC	_	CG	_	AC	_	_	_	_
13._IMC_47	_	_	_	_	_	AC	_	CG	_	AC	_	_	_	_
14._IMC_47	_	_	_	_	_	AC	_	CG	_	AC	_	_	_	_
15._MITC-000413	GG	_	_	_	_	AC	_	CG	_	AC	GG	_	_	_
16._GC-08-103-3-02	AA	_	_	_	_	AC	_	CG	_	AC	CC	_	_	_
17._GC-08-103-3-02	AA	_	_	_	_	AC	_	CG	_	AC	CC	_	_	_
18._GC-08-103-3-02	AA	_	_	_	_	AC	_	CG	_	AC	CC	_	_	_
19._GC-08-103-3-02	AA	_	_	_	_	AC	_	CG	_	AC	CC	_	_	_
20._GC-08-103-3-02	AA	_	_	_	_	AC	_	CG	_	AC	CC	_	_	_
21._GC-08-103-3-02	AA	_	_	_	_	AC	_	CG	_	AC	CC	_	_	_
22._GC-08-103-3-02	AA	_	_	_	_	AC	_	CG	_	AC	CC	_	_	_
23._GC-08-103-3-02	AA	_	_	_	_	AC	_	CG	_	AC	CC	_	_	_
24._GC-08-103-3-02	AA	_	_	_	_	AC	_	CG	_	AC	CC	_	_	_
25._GC-08-103-3-2	AA	_	_	_	_	AC	_	CG	_	AC	GG	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	CG	TT	GG	AG	TT	TT	AC	AT	CT	CC	GG	CG	AA
1._IMC_47	AA	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
2._RUQ_849	_	_	TT	GG	AG	_	_	AC	_	_	CC	-	_	AA
3._RUQ_849	AA	_	_	GG	_	_	_	_	_	_	CC	_	_	AG
4._IMC_47	AA	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
5._IMC_47	AG	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
6._IMC_47	AA	_	_	GT	_	_	_	_	_	_	CC	_	_	AG
7._IMC_47	AA	_	_	GT	_	_	_	_	_	_	CC	_	_	AG
8._IMC_47	AA	_	_	GT	_	_	_	_	_	_	CC	_	_	AG
9._IMC_47	AA	_	_	GT	_	_	_	_	_	_	CC	_	_	AG
10._IMC_47	AA	_	_	GT	_	_	_	_	_	_	CC	_	_	AG
11._IMC_47	AA	_	_	GT	_	_	_	_	_	_	CC	_	_	AG
12._IMC_47	AA	_	_	GT	_	_	_	_	_	_	CC	_	_	AG
13._IMC_47	AA	_	_	GT	_	_	_	_	_	_	CC	_	_	AG
14._IMC_47	AA	_	_	GT	_	_	_	_	_	_	CC	_	_	AG
15._MITC-000413	_	_	_	CC	AG	_	_	AC	_	CC	GG	GG	_	AA
16._GC-08-103-3-02	AA	_	CT	GT	AG	_	_	AC	_	CG	CC	AG	_	AG
17._GC-08-103-3-02	AA	_	CT	GT	AG	_	_	AC	_	CG	CC	AG	_	AG
18._GC-08-103-3-02	AA	_	CT	GT	AG	_	_	AC	_	CG	CC	AG	_	AG
19._GC-08-103-3-02	AA	_	CT	GT	AG	_	_	AC	_	CG	CC	AG	_	AG
20._GC-08-103-3-02	AA	_	CT	GT	AG	_	_	AC	_	CG	CC	AG	_	AG
21._GC-08-103-3-02	AA	_	CT	GT	AG	_	_	AC	_	CG	CC	AG	_	AG
22._GC-08-103-3-02	AA	_	CT	GT	AG	_	_	AC	_	CG	CC	AG	_	AG
23._GC-08-103-3-02	AA	_	CT	GT	AG	_	_	AC	_	CG	CC	AG	_	AG
24._GC-08-103-3-02	AA	_	CT	GT	AG	_	_	AC	_	CG	CC	AG	_	AG
25._GC-08-103-3-2	_	_	_	AC	AG	_	_	AC	_	CG	GG	AG	_	AG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	CT	AA	CC	GG	CT	CC	GT	AA	GT	GG	AT	AA	AG
1._IMC_47	_	_	_	_	GG	_	CC	_	_	GT	_	_	_	_
2._RUQ_849	CC	_	_	_	_	_	_	_	_	GT	_	_	_	_
3._RUQ_849	_	_	_	_	GG	_	CC	_	_	GT	_	_	_	_
4._IMC_47	_	_	_	_	GG	_	CC	_	_	GT	_	_	_	_
5._IMC_47	_	_	_	_	AG	_	CT	_	_	GT	_	_	_	_
6._IMC_47	_	_	_	_	AG	_	CT	_	_	GT	_	_	_	_
7._IMC_47	_	_	_	_	AG	_	CT	_	_	GT	_	_	_	_
8._IMC_47	_	_	_	_	AG	_	CT	_	_	GT	_	_	_	_
9._IMC_47	_	_	_	_	AG	_	CT	_	_	GT	_	_	_	_
10._IMC_47	_	_	_	_	AG	_	CT	_	_	GT	_	_	_	_
11._IMC_47	_	_	_	_	AG	_	CT	_	_	GT	_	_	_	_
12._IMC_47	_	_	_	_	AG	_	CT	_	_	GT	_	_	_	_
13._IMC_47	_	_	_	_	AG	_	CT	_	_	GT	_	_	_	_
14._IMC_47	_	_	_	_	AG	_	CT	_	_	GT	_	_	_	_
15._MITC-000413	_	_	_	_	GG	_	_	_	_	AA	_	_	_	_
16._GC-08-103-3-02	CC	_	_	_	AG	_	CT	_	_	GT	_	_	_	_
17._GC-08-103-3-02	CC	_	_	_	AG	_	CT	_	_	GT	_	_	_	_
18._GC-08-103-3-02	CC	_	_	_	AG	_	CT	_	_	GT	_	_	_	_
19._GC-08-103-3-02	CC	_	_	_	AG	_	CT	_	_	GT	_	_	_	_
20._GC-08-103-3-02	CC	_	_	_	AG	_	CT	_	_	GT	_	_	_	_
21._GC-08-103-3-02	CC	_	_	_	AG	_	CT	_	_	GT	_	_	_	_
22._GC-08-103-3-02	CC	_	_	_	AG	_	CT	_	_	GT	_	_	_	_
23._GC-08-103-3-02	CC	_	_	_	AG	_	CT	_	_	GT	_	_	_	_
24._GC-08-103-3-02	CC	_	_	_	AG	_	CT	_	_	GT	_	_	_	_
25._GC-08-103-3-2	_	_	_	_	AG	_	_	_	_	AC	_	_	_	_

	57	58	59
_Input profile	CG	TT	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._IMC_47	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_849	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._RUQ_849	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._IMC_47	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._IMC_47	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._IMC_47	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._IMC_47	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._IMC_47	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._IMC_47	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._IMC_47	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._IMC_47	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._IMC_47	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._IMC_47	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._IMC_47	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._MITC-000413	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-08-103-3-02	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-08-103-3-02	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._GC-08-103-3-02	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._GC-08-103-3-02	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._GC-08-103-3-02	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._GC-08-103-3-02	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._GC-08-103-3-02	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
23._GC-08-103-3-02	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
24._GC-08-103-3-02	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
25._GC-08-103-3-2	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: IMC_47 RUQ_849B

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._IMC_47

identical
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F401 T6

Dapeng Zhang, 2016

2._IMC_47 RUQ_849

96.9 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._IMC_47 RUQ_849

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

4._IMC_47

88.5 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D242

Dapeng Zhang, 2016

5._IMC_47

80.8 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F401 T1

Dapeng Zhang, 2016

6._IMC_47

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._IMC_47

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 7

Dapeng Zhang, 2016

8._IMC_47

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 10

Dapeng Zhang, 2016

9._IMC_47

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 12

Dapeng Zhang, 2016

10._IMC_47

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 6 > FP

Dapeng Zhang, 2016

11._IMC_47

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 5 > FP

Dapeng Zhang, 2016

12._IMC_47

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 3 > FP

Dapeng Zhang, 2016

13._IMC_47

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 1 > FP

Dapeng Zhang, 2016

14._IMC_47

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 11

Dapeng Zhang, 2016

15._IMC_47 MITC-000413

70.6 %
17 shared markers

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USDA-SHRS, United States of America

16._IMC_47 GC-08-103-3-02

69 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

17._IMC_47 GC-08-103-3-02

69 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

18._IMC_47 GC-08-103-3-02

69 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

19._IMC_47 GC-08-103-3-02

69 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

20._IMC_47 GC-08-103-3-02

69 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP4

21._IMC_47 GC-08-103-3-02

69 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

22._IMC_47 GC-08-103-3-02

69 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

23._IMC_47 GC-08-103-3-02

69 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

24._IMC_47 GC-08-103-3-02

69 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

25._IMC_47 GC-08-103-3-2

47.1 %
17 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: Nursery, Block: -, Rep: -, Tree: 1

Notes: Brazil_Selections_Poss_grandparent/ CW

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP591	25	TcSNP602
26	TcSNP640	27	TcSNP642	28	TcSNP644	29	TcSNP645	30	TcSNP660
31	TcSNP702	32	TcSNP723	33	TcSNP731	34	TcSNP739	35	TcSNP800
36	TcSNP823	37	TcSNP835	38	TcSNP836	39	TcSNP872	40	TcSNP899
41	TcSNP945	42	TcSNP998	43	TcSNP999	44	TcSNP1010	45	TcSNP1019
46	TcSNP1053	47	TcSNP1062	48	TcSNP1112	49	TcSNP1144	50	TcSNP1205
51	TcSNP1230	52	TcSNP1253	53	TcSNP1275	54	TcSNP1293	55	TcSNP1401
56	TcSNP1404	57	TcSNP1458	58	TcSNP1524	59	TcSNP1527